HL_8SCB_101

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGCGUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_101 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2629

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8SCB|1|9|G|697
8SCB|1|9|G|698
8SCB|1|9|C|730
8SCB|1|9|G|731
8SCB|1|9|U|732
8SCB|1|9|C|733

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain HH

eS7

Chain WW

uS8