HL_8SCB_113

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_113 not in the Motif Atlas

Homologous match to HL_8C3A_219

Geometric discrepancy: 0.0925

The information below is about HL_8C3A_219

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8SCB|1|9|A|1353
8SCB|1|9|G|1354
8SCB|1|9|C|1355
8SCB|1|9|G|1356
8SCB|1|9|A|1357
8SCB|1|9|U|1358

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain AA

uS2 (SA)

Chain CC

uS5