HL_8SCB_115

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGCGGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_115 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2989

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

8SCB|1|9|A|1421
8SCB|1|9|G|1422
8SCB|1|9|C|1423
8SCB|1|9|G|1424
8SCB|1|9|G|1425
8SCB|1|9|U|1426

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain TT

eS19