3D structure

PDB id
8SCB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Terminating ribosome with SRI-41315
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
UUCGCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8SCB_130 not in the Motif Atlas
Geometric match to HL_1P6V_001
Geometric discrepancy: 0.3766
The information below is about HL_1P6V_001
Detailed Annotation
UNCG variation
Broad Annotation
UNCG variation
Motif group
HL_53890.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
15

Unit IDs

8SCB|1|9|U|197
8SCB|1|9|U|198
8SCB|1|9|C|199
8SCB|1|9|G|200
8SCB|1|9|C|201
8SCB|1|9|G|202

Current chains

Chain 9
18S_rRNA

Nearby chains

Chain II
eS8

Coloring options:


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