HL_8SH5_002

3D structure

PDB id

8SH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 3'cap-independent translation enhancers (CITE) from Pea enation mosaic virus RNA 2 (PEMV2) with Fab BL3-6K170A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CCUUCG

Length

6 nucleotides

Bulged bases

8SH5|1|R|U|58||||2_556, 8SH5|1|R|C|60||||2_556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SH5_002 not in the Motif Atlas

Geometric match to HL_8UIW_004

Geometric discrepancy: 0.2068

The information below is about HL_8UIW_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

8SH5|1|R|C|56||||2_556
8SH5|1|R|C|57||||2_556
8SH5|1|R|U|58||||2_556
8SH5|1|R|U|59||||2_556
8SH5|1|R|C|60||||2_556
8SH5|1|R|G|61||||2_556

Current chains

Chain R

RNA (88-MER)

Nearby chains