HL_8SUP_008

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

8SUP|1|2|C|450, 8SUP|1|2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SUP_008 not in the Motif Atlas

Homologous match to HL_9PN5_086

Geometric discrepancy: 0.0868

The information below is about HL_9PN5_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.3

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

8SUP|1|2|C|441
8SUP|1|2|C|442
8SUP|1|2|U|443
8SUP|1|2|G|444
8SUP|1|2|A|445
8SUP|1|2|G|446
8SUP|1|2|A|447
8SUP|1|2|A|448
8SUP|1|2|A|449
8SUP|1|2|C|450
8SUP|1|2|G|451
8SUP|1|2|G|452

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain H

eS6

Chain J

eS8

Chain Z

eS24