HL_8SUP_011

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCUUUCGAG

Length

10 nucleotides

Bulged bases

8SUP|1|2|U|540, 8SUP|1|2|U|541, 8SUP|1|2|U|542, 8SUP|1|2|C|543, 8SUP|1|2|G|544, 8SUP|1|2|A|545

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|C|537
8SUP|1|2|U|538
8SUP|1|2|C|539
8SUP|1|2|U|540
8SUP|1|2|U|541
8SUP|1|2|U|542
8SUP|1|2|C|543
8SUP|1|2|G|544
8SUP|1|2|A|545
8SUP|1|2|G|546

Current chains

Chain 2

18S rRNA

Nearby chains