HL_8SUP_015

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUAUUUUGUUGGUUUUCGGAAC

Length

25 nucleotides

Bulged bases

8SUP|1|2|U|882, 8SUP|1|2|A|886, 8SUP|1|2|U|887, 8SUP|1|2|U|888, 8SUP|1|2|U|889, 8SUP|1|2|U|890, 8SUP|1|2|G|891, 8SUP|1|2|U|892, 8SUP|1|2|U|893, 8SUP|1|2|G|894, 8SUP|1|2|G|895, 8SUP|1|2|U|896, 8SUP|1|2|U|897

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|G|881
8SUP|1|2|U|882
8SUP|1|2|U|883
8SUP|1|2|C|884
8SUP|1|2|U|885
8SUP|1|2|A|886
8SUP|1|2|U|887
8SUP|1|2|U|888
8SUP|1|2|U|889
8SUP|1|2|U|890
8SUP|1|2|G|891
8SUP|1|2|U|892
8SUP|1|2|U|893
8SUP|1|2|G|894
8SUP|1|2|G|895
8SUP|1|2|U|896
8SUP|1|2|U|897
8SUP|1|2|U|898
8SUP|1|2|U|899
8SUP|1|2|C|900
8SUP|1|2|G|901
8SUP|1|2|G|902
8SUP|1|2|A|903
8SUP|1|2|A|904
8SUP|1|2|C|905

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17