HL_8SUP_016

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|A|957
8SUP|1|2|G|958
8SUP|1|2|G|959
8SUP|1|2|U|960
8SUP|1|2|G|961
8SUP|1|2|A|962
8SUP|1|2|A|963
8SUP|1|2|A|964
8SUP|1|2|U|965
8SUP|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

EMCV mRNA

Chain G

uS7

Chain P

Small ribosomal subunit protein uS11

Chain d

eS28

Chain j

Eukaryotic translation initiation factor 2 subunit 1