HL_8SUP_021

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SUP_021 not in the Motif Atlas

Homologous match to HL_9PN5_100

Geometric discrepancy: 0.0981

The information below is about HL_9PN5_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

8SUP|1|2|U|1178
8SUP|1|2|G|1179
8SUP|1|2|C|1180
8SUP|1|2|A|1181
8SUP|1|2|A|1182
8SUP|1|2|A|1183

Current chains

Chain 2

18S rRNA

Nearby chains

Chain n

eL41