HL_8SUP_022
3D structure
- PDB id
- 8SUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8SUP|1|2|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8SUP_022 not in the Motif Atlas
- Homologous match to HL_9H3G_099
- Geometric discrepancy: 0.107
- The information below is about HL_9H3G_099
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8SUP|1|2|G|1245
8SUP|1|2|A|1246
8SUP|1|2|C|1247
8SUP|1|2|U|1248
8SUP|1|2|C|1249
8SUP|1|2|A|1250
8SUP|1|2|A|1251
8SUP|1|2|C|1252
8SUP|1|2|A|1253
8SUP|1|2|C|1254
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain R
- uS9
- Chain V
- uS10
- Chain e
- uS14
- Chain i
- Transfer RNA; tRNA
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