HL_8SUP_023
3D structure
- PDB id
- 8SUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 8SUP|1|2|U|1300, 8SUP|1|2|G|1302, 8SUP|1|2|C|1303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8SUP_023 not in the Motif Atlas
- Homologous match to HL_9PN5_102
- Geometric discrepancy: 0.5793
- The information below is about HL_9PN5_102
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8SUP|1|2|A|1295
8SUP|1|2|U|1296
8SUP|1|2|U|1297
8SUP|1|2|G|1298
8SUP|1|2|A|1299
8SUP|1|2|U|1300
8SUP|1|2|A|1301
8SUP|1|2|G|1302
8SUP|1|2|C|1303
8SUP|1|2|U|1304
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Q
- uS19
- Chain e
- uS14
- Chain g
- eS31
Coloring options: