HL_8SUP_031

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SUP_031 not in the Motif Atlas

Geometric match to HL_8DP3_003

Geometric discrepancy: 0.3302

The information below is about HL_8DP3_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

8SUP|1|3|G|546
8SUP|1|3|G|547
8SUP|1|3|C|548
8SUP|1|3|G|549
8SUP|1|3|A|550
8SUP|1|3|C|551

Current chains

Chain 3

EMCV mRNA

Nearby chains

Chain i

Transfer RNA; tRNA