HL_8SUP_032

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SUP_032 not in the Motif Atlas

Geometric match to HL_9M86_002

Geometric discrepancy: 0.3034

The information below is about HL_9M86_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

8SUP|1|3|C|566
8SUP|1|3|C|567
8SUP|1|3|A|568
8SUP|1|3|A|569
8SUP|1|3|A|570
8SUP|1|3|A|571
8SUP|1|3|G|572

Current chains

Chain 3

EMCV mRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Q

uS19

Chain T

uS13