HL_8SYL_009

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8SYL|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SYL_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0803

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8SYL|1|A|C|305
8SYL|1|A|U|306
8SYL|1|A|G|307
8SYL|1|A|G|308
8SYL|1|A|A|309
8SYL|1|A|A|310
8SYL|1|A|A|311
8SYL|1|A|G|312

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L24