3D structure

PDB id
8SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAUCCCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8SYL_025 not in the Motif Atlas
Homologous match to HL_7RQB_026
Geometric discrepancy: 0.4915
The information below is about HL_7RQB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56241.1
Basepair signature
cWW-cSW-F
Number of instances in this motif group
15

Unit IDs

8SYL|1|A|C|885
8SYL|1|A|A|886
8SYL|1|A|U|887
8SYL|1|A|C|888
8SYL|1|A|C|889
8SYL|1|A|C|890
8SYL|1|A|G|891

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain m
30S ribosomal protein S13
Chain s
30S ribosomal protein S19

Coloring options:


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