HL_8SYL_040

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8SYL|1|A|U|1729, 8SYL|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SYL_040 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.268

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8SYL|1|A|C|1727
8SYL|1|A|C|1728
8SYL|1|A|U|1729
8SYL|1|A|C|1730
8SYL|1|A|G|1731
8SYL|1|A|C|1732
8SYL|1|A|G|1733

Current chains

Chain A

23S Ribosomal RNA

Nearby chains