HL_8SYL_069
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUGAUCAUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8SYL_069 not in the Motif Atlas
- Homologous match to HL_5J7L_001
- Geometric discrepancy: 0.0709
- The information below is about HL_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8SYL|1|a|U|12
8SYL|1|a|U|13
8SYL|1|a|U|14
8SYL|1|a|G|15
8SYL|1|a|A|16
8SYL|1|a|U|17
8SYL|1|a|C|18
8SYL|1|a|A|19
8SYL|1|a|U|20
8SYL|1|a|G|21
8SYL|1|a|G|22
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain e
- 30S ribosomal protein S5
- Chain v
- M-F-Stop mRNA
Coloring options: