HL_8SYL_080

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8SYL|1|a|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SYL_080 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2675

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8SYL|1|a|G|462
8SYL|1|a|U|463
8SYL|1|a|U|464
8SYL|1|a|A|465
8SYL|1|a|A|466
8SYL|1|a|U|467
8SYL|1|a|A|468
8SYL|1|a|C|469
8SYL|1|a|C|470

Current chains

Chain a

16S Ribosomal RNA

Nearby chains