HL_8SYL_093

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8SYL|1|a|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SYL_093 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2805

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8SYL|1|a|G|1134
8SYL|1|a|U|1135
8SYL|1|a|C|1136
8SYL|1|a|C|1137
8SYL|1|a|G|1138
8SYL|1|a|G|1139
8SYL|1|a|C|1140

Current chains

Chain a

16S Ribosomal RNA

Nearby chains