HL_8SYL_102
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8SYL_102 not in the Motif Atlas
- Homologous match to HL_5L4O_003
- Geometric discrepancy: 0.1088
- The information below is about HL_5L4O_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8SYL|1|w|G|53
8SYL|1|w|5MU|54
8SYL|1|w|PSU|55
8SYL|1|w|C|56
8SYL|1|w|G|57
8SYL|1|w|A|58
8SYL|1|w|U|59
8SYL|1|w|U|60
8SYL|1|w|C|61
Current chains
- Chain w
- phenylalanine tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S ribosomal protein L16
Coloring options: