HL_8SYL_107
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GA(PSU)UGAA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- 8SYL|1|y|U|33, 8SYL|1|y|A|38
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8SYL_107 not in the Motif Atlas
- Homologous match to HL_4WQ1_224
- Geometric discrepancy: 0.4936
- The information below is about HL_4WQ1_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8SYL|1|y|G|30
8SYL|1|y|A|31
8SYL|1|y|PSU|32
8SYL|1|y|U|33
8SYL|1|y|G|34
8SYL|1|y|A|35
8SYL|1|y|A|36
8SYL|1|y|MIA|37
8SYL|1|y|A|38
8SYL|1|y|PSU|39
8SYL|1|y|C|40
Current chains
- Chain y
- phenylalanine tRNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain g
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S11
- Chain v
- M-F-Stop mRNA
- Chain x
- Transfer RNA; tRNA
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