HL_8SYL_108
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 8SYL|1|y|C|56, 8SYL|1|y|G|57
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8SYL_108 not in the Motif Atlas
- Homologous match to HL_1U0B_003
- Geometric discrepancy: 0.3424
- The information below is about HL_1U0B_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
8SYL|1|y|G|53
8SYL|1|y|5MU|54
8SYL|1|y|PSU|55
8SYL|1|y|C|56
8SYL|1|y|G|57
8SYL|1|y|A|58
8SYL|1|y|U|59
8SYL|1|y|U|60
8SYL|1|y|C|61
Current chains
- Chain y
- phenylalanine tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: