HL_8T2X_056
3D structure
- PDB id
- 8T2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T2X_056 not in the Motif Atlas
- Homologous match to HL_8P9A_168
- Geometric discrepancy: 0.0898
- The information below is about HL_8P9A_168
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
8T2X|1|A1|C|2693
8T2X|1|A1|A|2694
8T2X|1|A1|A|2695
8T2X|1|A1|A|2696
8T2X|1|A1|A|2697
8T2X|1|A1|G|2698
8T2X|1|A1|G|2699
8T2X|1|A1|G|2700
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AI
- RPL10 isoform 1
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ao
- 60S ribosomal protein L42-A
- Chain tP
- Transfer RNA; tRNA
Coloring options: