HL_8T2X_081

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8T2X|1|B5|C|189, 8T2X|1|B5|C|190, 8T2X|1|B5|C|191, 8T2X|1|B5|U|192, 8T2X|1|B5|U|193, 8T2X|1|B5|U|194, 8T2X|1|B5|G|195

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2X_081 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.291

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8T2X|1|B5|C|186
8T2X|1|B5|G|187
8T2X|1|B5|A|188
8T2X|1|B5|C|189
8T2X|1|B5|C|190
8T2X|1|B5|C|191
8T2X|1|B5|U|192
8T2X|1|B5|U|193
8T2X|1|B5|U|194
8T2X|1|B5|G|195
8T2X|1|B5|G|196
8T2X|1|B5|A|197
8T2X|1|B5|A|198
8T2X|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A