HL_8T2X_089
3D structure
- PDB id
- 8T2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- UAAUUCA
- Length
- 7 nucleotides
- Bulged bases
- 8T2X|1|B5|A|452, 8T2X|1|B5|U|454, 8T2X|1|B5|C|455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T2X_089 not in the Motif Atlas
- Homologous match to HL_8P9A_201
- Geometric discrepancy: 0.2636
- The information below is about HL_8P9A_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48417.6
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
8T2X|1|B5|U|450
8T2X|1|B5|A|451
8T2X|1|B5|A|452
8T2X|1|B5|U|453
8T2X|1|B5|U|454
8T2X|1|B5|C|455
8T2X|1|B5|A|456
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BY
- 40S ribosomal protein S24-A
Coloring options: