HL_8T2X_096

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

8T2X|1|B5|U|832, 8T2X|1|B5|U|833, 8T2X|1|B5|U|836

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T2X|1|B5|C|827
8T2X|1|B5|U|828
8T2X|1|B5|A|829
8T2X|1|B5|U|830
8T2X|1|B5|U|831
8T2X|1|B5|U|832
8T2X|1|B5|U|833
8T2X|1|B5|G|834
8T2X|1|B5|U|835
8T2X|1|B5|U|836
8T2X|1|B5|G|837
8T2X|1|B5|G|838
8T2X|1|B5|U|839
8T2X|1|B5|U|840
8T2X|1|B5|U|841
8T2X|1|B5|C|842
8T2X|1|B5|U|843
8T2X|1|B5|A|844
8T2X|1|B5|G|845

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A