HL_8T2Y_009
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 8T2Y|1|A1|G|304, 8T2Y|1|A1|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T2Y_009 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.0619
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8T2Y|1|A1|G|303
8T2Y|1|A1|G|304
8T2Y|1|A1|U|305
8T2Y|1|A1|A|306
8T2Y|1|A1|A|307
8T2Y|1|A1|A|308
8T2Y|1|A1|U|309
8T2Y|1|A1|U|310
8T2Y|1|A1|C|311
8T2Y|1|A1|C|312
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ai
- 60S ribosomal protein L36-A
- Chain Ao
- 60S ribosomal protein L42-A
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