HL_8T2Y_039

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

8T2Y|1|A1|C|1793, 8T2Y|1|A1|G|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Y_039 not in the Motif Atlas

Homologous match to HL_8P9A_151

Geometric discrepancy: 0.0654

The information below is about HL_8P9A_151

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8T2Y|1|A1|C|1792
8T2Y|1|A1|C|1793
8T2Y|1|A1|G|1794
8T2Y|1|A1|U|1795
8T2Y|1|A1|G|1796

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Ap

60S ribosomal protein L43-A