HL_8T2Y_043

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

8T2Y|1|A1|G|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Y_043 not in the Motif Atlas

Homologous match to HL_8P9A_156

Geometric discrepancy: 0.0895

The information below is about HL_8P9A_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

8T2Y|1|A1|G|2110
8T2Y|1|A1|G|2111
8T2Y|1|A1|U|2112
8T2Y|1|A1|A|2113
8T2Y|1|A1|C|2114

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AW

RPL24A isoform 1

Chain B5

Small subunit ribosomal RNA; SSU rRNA