HL_8T2Y_080

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8T2Y|1|B5|C|189, 8T2Y|1|B5|C|190, 8T2Y|1|B5|C|191, 8T2Y|1|B5|U|192, 8T2Y|1|B5|U|193, 8T2Y|1|B5|U|194, 8T2Y|1|B5|G|195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Y_080 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.27

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8T2Y|1|B5|C|186
8T2Y|1|B5|G|187
8T2Y|1|B5|A|188
8T2Y|1|B5|C|189
8T2Y|1|B5|C|190
8T2Y|1|B5|C|191
8T2Y|1|B5|U|192
8T2Y|1|B5|U|193
8T2Y|1|B5|U|194
8T2Y|1|B5|G|195
8T2Y|1|B5|G|196
8T2Y|1|B5|A|197
8T2Y|1|B5|A|198
8T2Y|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A