HL_8T2Y_095

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

8T2Y|1|B5|U|833, 8T2Y|1|B5|U|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Y_095 not in the Motif Atlas

Geometric match to HL_8VM9_005

Geometric discrepancy: 0.3948

The information below is about HL_8VM9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8T2Y|1|B5|C|827
8T2Y|1|B5|U|828
8T2Y|1|B5|A|829
8T2Y|1|B5|U|830
8T2Y|1|B5|U|831
8T2Y|1|B5|U|832
8T2Y|1|B5|U|833
8T2Y|1|B5|G|834
8T2Y|1|B5|U|835
8T2Y|1|B5|U|836
8T2Y|1|B5|G|837
8T2Y|1|B5|G|838
8T2Y|1|B5|U|839
8T2Y|1|B5|U|840
8T2Y|1|B5|U|841
8T2Y|1|B5|C|842
8T2Y|1|B5|U|843
8T2Y|1|B5|A|844
8T2Y|1|B5|G|845

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A