HL_8T2Y_099

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

8T2Y|1|B5|U|1058, 8T2Y|1|B5|U|1059, 8T2Y|1|B5|U|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T2Y|1|B5|U|1055
8T2Y|1|B5|U|1056
8T2Y|1|B5|U|1057
8T2Y|1|B5|U|1058
8T2Y|1|B5|U|1059
8T2Y|1|B5|U|1060
8T2Y|1|B5|A|1061
8T2Y|1|B5|A|1062
8T2Y|1|B5|U|1063
8T2Y|1|B5|G|1064

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BB

RPS1A isoform 1

Chain Bb

40S ribosomal protein S27-A