HL_8T2Y_110

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

8T2Y|1|B5|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Y_110 not in the Motif Atlas

Homologous match to HL_8P9A_223

Geometric discrepancy: 0.1406

The information below is about HL_8P9A_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T2Y|1|B5|G|1594
8T2Y|1|B5|U|1595
8T2Y|1|B5|C|1596
8T2Y|1|B5|A|1597
8T2Y|1|B5|U|1598
8T2Y|1|B5|C|1599
8T2Y|1|B5|A|1600
8T2Y|1|B5|G|1601
8T2Y|1|B5|C|1602

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BQ

40S ribosomal protein S16-A

Chain BT

40S ribosomal protein S19-A

Chain BU

RPS20 isoform 1

Chain Bd

RPS29A isoform 1