HL_8T2Y_113
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAGUAGGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8T2Y|1|tA|A|17, 8T2Y|1|tA|G|18, 8T2Y|1|tA|G|19, 8T2Y|1|tA|A|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T2Y_113 not in the Motif Atlas
- Homologous match to HL_7U2I_103
- Geometric discrepancy: 0.4361
- The information below is about HL_7U2I_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T2Y|1|tA|C|13
8T2Y|1|tA|A|14
8T2Y|1|tA|G|15
8T2Y|1|tA|U|16
8T2Y|1|tA|A|17
8T2Y|1|tA|G|18
8T2Y|1|tA|G|19
8T2Y|1|tA|A|20
8T2Y|1|tA|A|21
8T2Y|1|tA|G|22
Current chains
- Chain tA
- A site tRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AI
- RPL10 isoform 1
Coloring options: