HL_8T2Y_116

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAGUGGAAG

Length

9 nucleotides

Bulged bases

8T2Y|1|tP|U|16, 8T2Y|1|tP|G|18, 8T2Y|1|tP|G|19, 8T2Y|1|tP|A|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Y_116 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.2297

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8T2Y|1|tP|C|13
8T2Y|1|tP|A|14
8T2Y|1|tP|G|15
8T2Y|1|tP|U|16
8T2Y|1|tP|G|18
8T2Y|1|tP|G|19
8T2Y|1|tP|A|20
8T2Y|1|tP|A|21
8T2Y|1|tP|G|22

Current chains

Chain tP

P site tRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AJ

RPL11A isoform 1

Chain Ao

60S ribosomal protein L42-A