HL_8T2Y_118
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T2Y_118 not in the Motif Atlas
- Homologous match to HL_5E6M_003
- Geometric discrepancy: 0.1926
- The information below is about HL_5E6M_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
8T2Y|1|tP|G|53
8T2Y|1|tP|A|54
8T2Y|1|tP|U|55
8T2Y|1|tP|C|56
8T2Y|1|tP|G|57
8T2Y|1|tP|A|58
8T2Y|1|tP|A|59
8T2Y|1|tP|A|60
8T2Y|1|tP|C|61
Current chains
- Chain tP
- P site tRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AJ
- RPL11A isoform 1
- Chain Ao
- 60S ribosomal protein L42-A
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