HL_8T2Z_052
3D structure
- PDB id
- 8T2Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8T2Z|1|A1|G|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T2Z_052 not in the Motif Atlas
- Homologous match to HL_8P9A_165
- Geometric discrepancy: 0.0919
- The information below is about HL_8P9A_165
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8T2Z|1|A1|C|2616
8T2Z|1|A1|U|2617
8T2Z|1|A1|G|2618
8T2Z|1|A1|G|2619
8T2Z|1|A1|G|2620
8T2Z|1|A1|G|2621
8T2Z|1|A1|C|2622
8T2Z|1|A1|G|2623
8T2Z|1|A1|G|2624
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AI
- RPL10 isoform 1
- Chain Ab
- RPL29 isoform 1
- Chain tP
- Transfer RNA; tRNA
Coloring options: