HL_8T2Z_065

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8T2Z|1|A1|G|3116, 8T2Z|1|A1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_065 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0633

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8T2Z|1|A1|C|3110
8T2Z|1|A1|U|3111
8T2Z|1|A1|G|3112
8T2Z|1|A1|A|3113
8T2Z|1|A1|A|3114
8T2Z|1|A1|C|3115
8T2Z|1|A1|G|3116
8T2Z|1|A1|C|3117
8T2Z|1|A1|C|3118
8T2Z|1|A1|U|3119
8T2Z|1|A1|C|3120
8T2Z|1|A1|U|3121
8T2Z|1|A1|A|3122
8T2Z|1|A1|A|3123
8T2Z|1|A1|G|3124

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AO

60S ribosomal protein L16-A

Chain Am

Ubiquitin-60S ribosomal protein L40