HL_8T2Z_076

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8T2Z|1|A4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_076 not in the Motif Atlas

Homologous match to HL_8P4V_075

Geometric discrepancy: 0.1875

The information below is about HL_8P4V_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8T2Z|1|A4|G|124
8T2Z|1|A4|U|125
8T2Z|1|A4|A|126
8T2Z|1|A4|U|127
8T2Z|1|A4|U|128
8T2Z|1|A4|C|129

Current chains

Chain A4

5.8 S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AX

60S ribosomal protein L25