HL_8T2Z_107

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_107 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.1836

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8T2Z|1|B5|C|1501
8T2Z|1|B5|G|1502
8T2Z|1|B5|A|1503
8T2Z|1|B5|G|1504
8T2Z|1|B5|A|1505
8T2Z|1|B5|G|1506

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BP

RPS15 isoform 1

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A