HL_8T30_028

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

8T30|1|A1|G|1349, 8T30|1|A1|A|1352, 8T30|1|A1|U|1353, 8T30|1|A1|G|1354, 8T30|1|A1|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T30|1|A1|U|1347
8T30|1|A1|U|1348
8T30|1|A1|G|1349
8T30|1|A1|A|1350
8T30|1|A1|U|1351
8T30|1|A1|A|1352
8T30|1|A1|U|1353
8T30|1|A1|G|1354
8T30|1|A1|A|1355
8T30|1|A1|U|1356
8T30|1|A1|G|1357

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AE

60S ribosomal protein L6-A

Chain AQ

60S ribosomal protein L18-A