HL_8T30_038

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

8T30|1|A1|C|1762, 8T30|1|A1|U|1763, 8T30|1|A1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T30_038 not in the Motif Atlas

Geometric match to HL_7ENI_002

Geometric discrepancy: 0.3912

The information below is about HL_7ENI_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

8T30|1|A1|C|1759
8T30|1|A1|A|1760
8T30|1|A1|C|1761
8T30|1|A1|C|1762
8T30|1|A1|U|1763
8T30|1|A1|U|1764
8T30|1|A1|U|1765
8T30|1|A1|G|1766

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AU

60S ribosomal protein L22-A

Chain AX

60S ribosomal protein L25