HL_8T30_047

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GAGUAAC(PSU)A(PSU)GAC(PSU)C(PSU)

Length

16 nucleotides

Bulged bases

8T30|1|A1|A|2256

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T30|1|A1|G|2251
8T30|1|A1|A|2252
8T30|1|A1|G|2253
8T30|1|A1|U|2254
8T30|1|A1|A|2255
8T30|1|A1|A|2256
8T30|1|A1|C|2257
8T30|1|A1|PSU|2258
8T30|1|A1|A|2259
8T30|1|A1|PSU|2260
8T30|1|A1|G|2261
8T30|1|A1|A|2262
8T30|1|A1|C|2263
8T30|1|A1|PSU|2264
8T30|1|A1|C|2265
8T30|1|A1|PSU|2266

Current chains

Chain A1

25S rRNA

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A