HL_8T30_052

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8T30|1|A1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T30_052 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.0779

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8T30|1|A1|C|2616
8T30|1|A1|U|2617
8T30|1|A1|G|2618
8T30|1|A1|G|2619
8T30|1|A1|G|2620
8T30|1|A1|G|2621
8T30|1|A1|C|2622
8T30|1|A1|G|2623
8T30|1|A1|G|2624

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

RPL10 isoform 1

Chain Ab

RPL29 isoform 1