HL_8T30_055

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T30_055 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.0953

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8T30|1|A1|C|2693
8T30|1|A1|A|2694
8T30|1|A1|A|2695
8T30|1|A1|A|2696
8T30|1|A1|A|2697
8T30|1|A1|G|2698
8T30|1|A1|G|2699
8T30|1|A1|G|2700

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

RPL10 isoform 1

Chain AT

60S ribosomal protein L21-A

Chain Ao

60S ribosomal protein L42-A