HL_8T30_067

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8T30|1|A1|A|3243, 8T30|1|A1|A|3244, 8T30|1|A1|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T30_067 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.0902

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8T30|1|A1|C|3240
8T30|1|A1|G|3241
8T30|1|A1|G|3242
8T30|1|A1|A|3243
8T30|1|A1|A|3244
8T30|1|A1|A|3245
8T30|1|A1|G|3246
8T30|1|A1|G|3247

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A