HL_8T30_074
3D structure
- PDB id
- 8T30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 8T30|1|A4|A|111, 8T30|1|A4|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T30_074 not in the Motif Atlas
- Homologous match to HL_8P9A_188
- Geometric discrepancy: 0.1308
- The information below is about HL_8P9A_188
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13184.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8T30|1|A4|C|108
8T30|1|A4|A|109
8T30|1|A4|C|110
8T30|1|A4|A|111
8T30|1|A4|U|112
8T30|1|A4|U|113
8T30|1|A4|G|114
Current chains
- Chain A4
- 5.8 S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- 60S ribosomal protein L25
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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