HL_8T30_079
3D structure
- PDB id
- 8T30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- CGACCCUUUGGAAG
- Length
- 14 nucleotides
- Bulged bases
- 8T30|1|B5|C|190, 8T30|1|B5|C|191, 8T30|1|B5|U|192, 8T30|1|B5|U|193, 8T30|1|B5|U|194, 8T30|1|B5|G|195
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T30_079 not in the Motif Atlas
- Geometric match to HL_361D_002
- Geometric discrepancy: 0.3029
- The information below is about HL_361D_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8T30|1|B5|C|186
8T30|1|B5|G|187
8T30|1|B5|A|188
8T30|1|B5|C|189
8T30|1|B5|C|190
8T30|1|B5|C|191
8T30|1|B5|U|192
8T30|1|B5|U|193
8T30|1|B5|U|194
8T30|1|B5|G|195
8T30|1|B5|G|196
8T30|1|B5|A|197
8T30|1|B5|A|198
8T30|1|B5|G|199
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BI
- 40S ribosomal protein S8-A
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