HL_8T3D_005
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 8T3D|1|A1|C|200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3D_005 not in the Motif Atlas
- Homologous match to HL_8C3A_005
- Geometric discrepancy: 0.1113
- The information below is about HL_8C3A_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8T3D|1|A1|U|194
8T3D|1|A1|U|195
8T3D|1|A1|G|196
8T3D|1|A1|G|197
8T3D|1|A1|A|198
8T3D|1|A1|A|199
8T3D|1|A1|C|200
8T3D|1|A1|A|201
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AY
- 60S ribosomal protein L26-A
- Chain Ae
- RPL32 isoform 1
Coloring options: